J3_4WQF_036

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQF|1|AA|U|529, 4WQF|1|AA|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQF_036 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0493

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQF|1|AA|G|30
4WQF|1|AA|C|31
*
4WQF|1|AA|G|500
4WQF|1|AA|U|501
4WQF|1|AA|G|502
4WQF|1|AA|A|503
4WQF|1|AA|A|504
4WQF|1|AA|A|505
4WQF|1|AA|A|506
4WQF|1|AA|G|507
4WQF|1|AA|A|508
4WQF|1|AA|A|509
4WQF|1|AA|C|510
*
4WQF|1|AA|G|521
4WQF|1|AA|A|522
4WQF|1|AA|G|523
4WQF|1|AA|U|524
4WQF|1|AA|G|525
4WQF|1|AA|A|526
4WQF|1|AA|A|527
4WQF|1|AA|A|528
4WQF|1|AA|U|529
4WQF|1|AA|A|530
4WQF|1|AA|G|531
4WQF|1|AA|A|532
4WQF|1|AA|G|533
4WQF|1|AA|C|534
4WQF|1|AA|C|535

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24