J3_4WQF_057

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQF|1|CA|U|504, 4WQF|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQF_057 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0609

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQF|1|CA|G|30
4WQF|1|CA|C|31
*
4WQF|1|CA|G|474
4WQF|1|CA|U|475
4WQF|1|CA|G|476
4WQF|1|CA|A|477
4WQF|1|CA|A|478
4WQF|1|CA|A|479
4WQF|1|CA|A|480
4WQF|1|CA|G|481
4WQF|1|CA|A|482
4WQF|1|CA|A|483
4WQF|1|CA|C|484
*
4WQF|1|CA|G|496
4WQF|1|CA|A|497
4WQF|1|CA|G|498
4WQF|1|CA|U|499
4WQF|1|CA|G|500
4WQF|1|CA|A|501
4WQF|1|CA|A|502
4WQF|1|CA|A|503
4WQF|1|CA|U|504
4WQF|1|CA|A|505
4WQF|1|CA|G|506
4WQF|1|CA|A|507
4WQF|1|CA|G|508
4WQF|1|CA|C|509
4WQF|1|CA|C|510

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24