J3_4WQR_009

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WQR|1|14|G|686, 4WQR|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQR_009 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0985

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQR|1|14|C|683
4WQR|1|14|G|684
4WQR|1|14|A|685
4WQR|1|14|G|686
4WQR|1|14|C|687
4WQR|1|14|U|688
4WQR|1|14|A|689
*
4WQR|1|14|U|773
4WQR|1|14|A|774
4WQR|1|14|G|775
*
4WQR|1|14|C|791
4WQR|1|14|G|792
4WQR|1|14|A|793
4WQR|1|14|G|794

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34