J3_4WQR_012

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQR_012 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0771

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQR|1|14|C|1298
4WQR|1|14|G|1299
4WQR|1|14|U|1300
4WQR|1|14|A|1301
4WQR|1|14|A|1302
4WQR|1|14|G|1303
*
4WQR|1|14|C|1625
4WQR|1|14|G|1626
4WQR|1|14|G|1627
*
4WQR|1|14|U|1639
4WQR|1|14|C|1640
4WQR|1|14|A|1641
4WQR|1|14|G|1642

Current chains

Chain 14

23S ribosomal RNA

Nearby chains