J3_4WQR_016

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WQR|1|14|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQR_016 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.115

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQR|1|14|C|2517
4WQR|1|14|A|2518
4WQR|1|14|U|2519
4WQR|1|14|C|2520
*
4WQR|1|14|G|2545
4WQR|1|14|U|2546
4WQR|1|14|U|2547
*
4WQR|1|14|A|2561
4WQR|1|14|U|2562
4WQR|1|14|U|2563
4WQR|1|14|A|2564
4WQR|1|14|A|2565
4WQR|1|14|A|2566
4WQR|1|14|G|2567

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14