J3_4WQR_047

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4WQR|1|14|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQR_047 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0864

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQR|1|14|C|297
4WQR|1|14|G|298
4WQR|1|14|A|299
4WQR|1|14|A|300
4WQR|1|14|G|301
*
4WQR|1|14|C|316
4WQR|1|14|G|317
4WQR|1|14|C|318
4WQR|1|14|C|319
4WQR|1|14|A|320
4WQR|1|14|G|321
4WQR|1|14|A|322
4WQR|1|14|G|323
4WQR|1|14|A|324
4WQR|1|14|G|325
*
4WQR|1|14|C|337
4WQR|1|14|G|338
4WQR|1|14|U|339
4WQR|1|14|A|340
4WQR|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24