J3_4WQR_065

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WQR|1|1H|C|34, 4WQR|1|1H|U|448, 4WQR|1|1H|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQR_065 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2681

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4WQR|1|1H|C|32
4WQR|1|1H|U|33
4WQR|1|1H|C|34
4WQR|1|1H|G|35
*
4WQR|1|1H|C|445
4WQR|1|1H|G|446
4WQR|1|1H|A|447
4WQR|1|1H|U|448
4WQR|1|1H|A|449
4WQR|1|1H|G|450
4WQR|1|1H|C|451
4WQR|1|1H|G|452
4WQR|1|1H|C|453
4WQR|1|1H|A|454
4WQR|1|1H|C|455
4WQR|1|1H|C|456
4WQR|1|1H|A|457
4WQR|1|1H|G|458
4WQR|1|1H|U|459
4WQR|1|1H|A|460
4WQR|1|1H|C|461
*
4WQR|1|1H|G|468
4WQR|1|1H|G|469
4WQR|1|1H|A|470
4WQR|1|1H|A|471
4WQR|1|1H|A|472
4WQR|1|1H|G|473

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain C8

50S ribosomal protein L20

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34