J3_4WQU_001

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WQU|1|AA|G|733, 4WQU|1|AA|G|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.043

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|730
4WQU|1|AA|G|731
4WQU|1|AA|A|732
4WQU|1|AA|G|733
4WQU|1|AA|C|734
4WQU|1|AA|U|735
4WQU|1|AA|A|736
*
4WQU|1|AA|U|820
4WQU|1|AA|A|821
4WQU|1|AA|G|822
*
4WQU|1|AA|C|838
4WQU|1|AA|G|839
4WQU|1|AA|A|840
4WQU|1|AA|G|841

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2