J3_4WQU_007

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

4WQU|1|AA|G|2346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_007 not in the Motif Atlas

Homologous match to J3_7RQB_011

Geometric discrepancy: 0.0427

The information below is about J3_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.4

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|2307
4WQU|1|AA|U|2308
4WQU|1|AA|C|2309
*
4WQU|1|AA|G|2333
4WQU|1|AA|A|2334
4WQU|1|AA|G|2335
*
4WQU|1|AA|U|2344
4WQU|1|AA|A|2345
4WQU|1|AA|G|2346
4WQU|1|AA|A|2347
4WQU|1|AA|A|2348
4WQU|1|AA|G|2349

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

50S ribosomal protein L5

Chain AS

50S ribosomal protein L18

Chain BW

Transfer RNA; tRNA