J3_4WQU_009

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

4WQU|1|AA|A|2803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_009 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1056

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|AA|C|2802
4WQU|1|AA|A|2803
4WQU|1|AA|C|2804
*
4WQU|1|AA|G|2816
4WQU|1|AA|G|2817
4WQU|1|AA|U|2818
4WQU|1|AA|A|2819
4WQU|1|AA|A|2820
4WQU|1|AA|G|2821
*
4WQU|1|AA|C|2899
4WQU|1|AA|G|2900
4WQU|1|AA|A|2901
4WQU|1|AA|G|2902
4WQU|1|AA|G|2903

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3