J3_4WQU_019

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WQU|1|CA|G|686, 4WQU|1|CA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_019 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0507

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|C|683
4WQU|1|CA|G|684
4WQU|1|CA|A|685
4WQU|1|CA|G|686
4WQU|1|CA|C|687
4WQU|1|CA|U|688
4WQU|1|CA|A|689
*
4WQU|1|CA|U|773
4WQU|1|CA|A|774
4WQU|1|CA|G|775
*
4WQU|1|CA|C|791
4WQU|1|CA|G|792
4WQU|1|CA|A|793
4WQU|1|CA|G|794

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2