J3_4WQU_024

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_024 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0625

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|CA|U|2091
4WQU|1|CA|U|2092
4WQU|1|CA|G|2093
*
4WQU|1|CA|C|2196
4WQU|1|CA|U|2197
4WQU|1|CA|A|2198
4WQU|1|CA|A|2199
4WQU|1|CA|C|2200
*
4WQU|1|CA|G|2223
4WQU|1|CA|G|2224
4WQU|1|CA|A|2225
4WQU|1|CA|C|2226
4WQU|1|CA|A|2227
4WQU|1|CA|G|2228

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28

Chain CD

50S ribosomal protein L2