J3_4WQU_041

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4WQU|1|AA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_041 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1134

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|AA|U|258
4WQU|1|AA|A|259
4WQU|1|AA|A|260
4WQU|1|AA|A|261
4WQU|1|AA|C|262
*
4WQU|1|AA|G|282
4WQU|1|AA|G|283
4WQU|1|AA|G|284
4WQU|1|AA|U|285
4WQU|1|AA|C|286
4WQU|1|AA|G|287
4WQU|1|AA|U|288
4WQU|1|AA|G|289
*
4WQU|1|AA|C|396
4WQU|1|AA|G|397

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains