J3_4WQU_042

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4WQU|1|AA|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_042 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0548

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|AA|C|321
4WQU|1|AA|G|322
4WQU|1|AA|A|323
4WQU|1|AA|A|324
4WQU|1|AA|G|325
*
4WQU|1|AA|C|340
4WQU|1|AA|G|341
4WQU|1|AA|C|342
4WQU|1|AA|C|343
4WQU|1|AA|A|344
4WQU|1|AA|G|345
4WQU|1|AA|A|346
4WQU|1|AA|G|347
4WQU|1|AA|A|348
4WQU|1|AA|G|349
*
4WQU|1|AA|C|361
4WQU|1|AA|G|362
4WQU|1|AA|U|363
4WQU|1|AA|A|364
4WQU|1|AA|G|365

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24