J3_4WQU_044

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WQU|1|AA|A|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_044 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0612

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQU|1|AA|G|1390
4WQU|1|AA|C|1391
4WQU|1|AA|G|1392
4WQU|1|AA|G|1393
4WQU|1|AA|G|1394
4WQU|1|AA|A|1395
4WQU|1|AA|C|1396
*
4WQU|1|AA|G|1427
4WQU|1|AA|G|1428
4WQU|1|AA|C|1429
4WQU|1|AA|A|1430
4WQU|1|AA|G|1431
*
4WQU|1|AA|C|1448
4WQU|1|AA|C|1449

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L23