J3_4WQU_048
3D structure
- PDB id
- 4WQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4WQU|1|AB|U|14, 4WQU|1|AB|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WQU_048 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.069
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4WQU|1|AB|C|11
4WQU|1|AB|C|12
4WQU|1|AB|A|13
4WQU|1|AB|U|14
4WQU|1|AB|A|15
4WQU|1|AB|G|16
*
4WQU|1|AB|C|68
4WQU|1|AB|G|69
*
4WQU|1|AB|U|108
4WQU|1|AB|C|109
4WQU|1|AB|G|110
Current chains
- Chain AB
- 5S Ribosomal RNA
Nearby chains
- Chain A0
- 50S ribosomal protein L27
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS
- 50S ribosomal protein L18
- Chain AZ
- 50S ribosomal protein L25
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