J3_4WQU_059

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_059 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0649

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|G|30
4WQU|1|CA|C|31
*
4WQU|1|CA|G|474
4WQU|1|CA|U|475
4WQU|1|CA|G|476
4WQU|1|CA|A|477
4WQU|1|CA|A|478
4WQU|1|CA|A|479
4WQU|1|CA|A|480
4WQU|1|CA|G|481
*
4WQU|1|CA|C|509
4WQU|1|CA|C|510

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L20

Chain CY

50S ribosomal protein L24