J3_4WQU_066

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WQU|1|CA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_066 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0759

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4WQU|1|CA|G|1344
4WQU|1|CA|C|1345
4WQU|1|CA|G|1346
4WQU|1|CA|G|1347
4WQU|1|CA|G|1348
4WQU|1|CA|A|1349
4WQU|1|CA|C|1350
*
4WQU|1|CA|G|1381
4WQU|1|CA|G|1382
4WQU|1|CA|C|1383
4WQU|1|CA|A|1384
4WQU|1|CA|G|1385
*
4WQU|1|CA|C|1402
4WQU|1|CA|C|1403

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CX

50S ribosomal protein L23