J3_4WQU_067

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_067 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.065

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|G|1424
4WQU|1|CA|G|1425
4WQU|1|CA|G|1426
4WQU|1|CA|A|1427
4WQU|1|CA|C|1428
4WQU|1|CA|G|1429
*
4WQU|1|CA|C|1564
4WQU|1|CA|C|1565
*
4WQU|1|CA|G|1568
4WQU|1|CA|A|1569
4WQU|1|CA|A|1570
4WQU|1|CA|A|1571
4WQU|1|CA|A|1572
4WQU|1|CA|G|1573
4WQU|1|CA|C|1574

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2