J3_4WQU_068
3D structure
- PDB id
- 4WQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4WQU|1|CA|A|2388, 4WQU|1|CA|U|2390, 4WQU|1|CA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WQU_068 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0597
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4WQU|1|CA|G|2282
4WQU|1|CA|C|2283
4WQU|1|CA|C|2284
*
4WQU|1|CA|G|2384
4WQU|1|CA|C|2385
4WQU|1|CA|C|2386
4WQU|1|CA|U|2387
4WQU|1|CA|A|2388
4WQU|1|CA|G|2389
4WQU|1|CA|U|2390
4WQU|1|CA|G|2391
4WQU|1|CA|A|2392
4WQU|1|CA|A|2393
4WQU|1|CA|C|2394
4WQU|1|CA|C|2395
*
4WQU|1|CA|G|2421
4WQU|1|CA|A|2422
4WQU|1|CA|U|2423
4WQU|1|CA|C|2424
4WQU|1|CA|A|2425
4WQU|1|CA|A|2426
4WQU|1|CA|C|2427
Current chains
- Chain CA
- 23S Ribosomal RNA
Nearby chains
- Chain C0
- 50S ribosomal protein L27
- Chain C1
- 50S ribosomal protein L28
- Chain C6
- 50S ribosomal protein L33
- Chain C8
- 50S ribosomal protein L35
- Chain CP
- 50S ribosomal protein L15
- Chain DY
- Transfer RNA; tRNA
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