J3_4WQU_071
3D structure
- PDB id
- 4WQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WQU_071 not in the Motif Atlas
- Geometric match to J3_4V88_078
- Geometric discrepancy: 0.2056
- The information below is about J3_4V88_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.1
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WQU|1|DA|G|46
4WQU|1|DA|C|47
*
4WQU|1|DA|G|361
4WQU|1|DA|G|362
4WQU|1|DA|A|363
4WQU|1|DA|A|364
4WQU|1|DA|U|365
4WQU|1|DA|C|366
4WQU|1|DA|U|367
*
4WQU|1|DA|A|393
4WQU|1|DA|G|394
4WQU|1|DA|C|395
Current chains
- Chain DA
- 16S Ribosomal RNA
Nearby chains
- Chain DL
- 30S ribosomal protein S12
- Chain DP
- 30S ribosomal protein S16
- Chain DX
- Dityromycin
- Chain DZ
- 50S ribosomal protein L9,Elongation factor G
Coloring options: