J3_4WQY_013

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

4WQY|1|BA|A|975, 4WQY|1|BA|G|976, 4WQY|1|BA|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_013 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0917

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4WQY|1|BA|U|955
4WQY|1|BA|U|956
4WQY|1|BA|U|957
4WQY|1|BA|A|958
4WQY|1|BA|A|959
4WQY|1|BA|U|960
4WQY|1|BA|U|961
4WQY|1|BA|C|962
*
4WQY|1|BA|G|973
4WQY|1|BA|A|974
4WQY|1|BA|A|975
4WQY|1|BA|G|976
4WQY|1|BA|A|977
4WQY|1|BA|A|978
4WQY|1|BA|C|979
4WQY|1|BA|C|980
4WQY|1|BA|U|981
4WQY|1|BA|U|982
4WQY|1|BA|A|983
4WQY|1|BA|C|984
*
4WQY|1|BA|G|1221
4WQY|1|BA|G|1222
4WQY|1|BA|C|1223
4WQY|1|BA|G|1224
4WQY|1|BA|A|1225

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BJ

30S ribosomal protein S10

Chain BM

30S ribosomal protein S13

Chain BN

30S ribosomal protein S14 type Z

Chain BS

30S ribosomal protein S19

Chain BZ

50S ribosomal protein L9,Elongation factor G