J3_4WRA_034

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_034 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.2161

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4WRA|1|1H|C|2789
4WRA|1|1H|A|2790
4WRA|1|1H|C|2791
*
4WRA|1|1H|G|2805
4WRA|1|1H|G|2807
4WRA|1|1H|U|2808
4WRA|1|1H|A|2809
4WRA|1|1H|A|2810
4WRA|1|1H|G|2811
*
4WRA|1|1H|C|2889
4WRA|1|1H|G|2891
4WRA|1|1H|A|2892
4WRA|1|1H|G|2893
4WRA|1|1H|G|2894

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain E8

50S ribosomal protein L22