J3_4WRA_047

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4WRA|1|14|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_047 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.083

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WRA|1|14|C|297
4WRA|1|14|G|298
4WRA|1|14|A|299
4WRA|1|14|A|300
4WRA|1|14|G|301
*
4WRA|1|14|C|316
4WRA|1|14|G|317
4WRA|1|14|C|318
4WRA|1|14|C|319
4WRA|1|14|A|320
4WRA|1|14|G|321
4WRA|1|14|A|322
4WRA|1|14|G|323
4WRA|1|14|A|324
4WRA|1|14|G|325
*
4WRA|1|14|C|337
4WRA|1|14|G|338
4WRA|1|14|U|339
4WRA|1|14|A|340
4WRA|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24