J3_4WRA_049

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WRA|1|14|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_049 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1632

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4WRA|1|14|G|1344
4WRA|1|14|C|1345
4WRA|1|14|G|1346
4WRA|1|14|G|1347
4WRA|1|14|G|1348
4WRA|1|14|A|1349
4WRA|1|14|C|1350
*
4WRA|1|14|G|1381
4WRA|1|14|G|1382
4WRA|1|14|C|1383
4WRA|1|14|A|1384
4WRA|1|14|G|1385
*
4WRA|1|14|C|1402
4WRA|1|14|C|1403

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23