J3_4WRA_063

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WRA|1|1H|C|34, 4WRA|1|1H|U|448, 4WRA|1|1H|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_063 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.2554

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

4WRA|1|1H|C|32
4WRA|1|1H|U|33
4WRA|1|1H|C|34
4WRA|1|1H|G|35
*
4WRA|1|1H|C|445
4WRA|1|1H|G|446
4WRA|1|1H|A|447
4WRA|1|1H|U|448
4WRA|1|1H|A|449
4WRA|1|1H|G|450
4WRA|1|1H|C|451
4WRA|1|1H|G|452
4WRA|1|1H|C|453
4WRA|1|1H|A|454
4WRA|1|1H|C|455
4WRA|1|1H|C|456
4WRA|1|1H|A|457
4WRA|1|1H|G|458
4WRA|1|1H|U|459
4WRA|1|1H|A|460
4WRA|1|1H|C|461
*
4WRA|1|1H|G|468
4WRA|1|1H|G|469
4WRA|1|1H|A|470
4WRA|1|1H|A|471
4WRA|1|1H|A|472
4WRA|1|1H|G|473

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain C8

50S ribosomal protein L20

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34