J3_4WSD_015
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 4WSD|1|14|G|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WSD_015 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.0837
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4WSD|1|14|C|2295
4WSD|1|14|U|2296
4WSD|1|14|C|2297
*
4WSD|1|14|G|2321
4WSD|1|14|A|2322
4WSD|1|14|G|2323
*
4WSD|1|14|U|2332
4WSD|1|14|A|2333
4WSD|1|14|G|2334
4WSD|1|14|A|2335
4WSD|1|14|A|2336
4WSD|1|14|G|2337
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 2L
- Transfer RNA; tRNA
- Chain 49
- 50S ribosomal protein L5
- Chain 65
- 50S ribosomal protein L18
- Chain E5
- 50S ribosomal protein L27
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