J3_4WSD_034

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_034 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0802

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WSD|1|13|G|46
4WSD|1|13|C|47
*
4WSD|1|13|G|361
4WSD|1|13|G|362
4WSD|1|13|A|363
4WSD|1|13|A|364
4WSD|1|13|U|365
4WSD|1|13|C|366
4WSD|1|13|U|367
*
4WSD|1|13|A|393
4WSD|1|13|G|394
4WSD|1|13|C|395

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 69

50S ribosomal protein L9

Chain 7I

30S ribosomal protein S16