3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4WSD|1|14|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WSD_045 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.077
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4WSD|1|14|C|297
4WSD|1|14|G|298
4WSD|1|14|A|299
4WSD|1|14|A|300
4WSD|1|14|G|301
*
4WSD|1|14|C|316
4WSD|1|14|G|317
4WSD|1|14|C|318
4WSD|1|14|C|319
4WSD|1|14|A|320
4WSD|1|14|G|321
4WSD|1|14|A|322
4WSD|1|14|G|323
4WSD|1|14|A|324
4WSD|1|14|G|325
*
4WSD|1|14|C|337
4WSD|1|14|G|338
4WSD|1|14|U|339
4WSD|1|14|A|340
4WSD|1|14|G|341

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 39
50S ribosomal protein L4
Chain C5
50S ribosomal protein L24

Coloring options:


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