J3_4WSD_061

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WSD|1|1H|C|34, 4WSD|1|1H|U|448, 4WSD|1|1H|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_061 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2611

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4WSD|1|1H|C|32
4WSD|1|1H|U|33
4WSD|1|1H|C|34
4WSD|1|1H|G|35
*
4WSD|1|1H|C|445
4WSD|1|1H|G|446
4WSD|1|1H|A|447
4WSD|1|1H|U|448
4WSD|1|1H|A|449
4WSD|1|1H|G|450
4WSD|1|1H|C|451
4WSD|1|1H|G|452
4WSD|1|1H|C|453
4WSD|1|1H|A|454
4WSD|1|1H|C|455
4WSD|1|1H|C|456
4WSD|1|1H|A|457
4WSD|1|1H|G|458
4WSD|1|1H|U|459
4WSD|1|1H|A|460
4WSD|1|1H|C|461
*
4WSD|1|1H|G|468
4WSD|1|1H|G|469
4WSD|1|1H|A|470
4WSD|1|1H|A|471
4WSD|1|1H|A|472
4WSD|1|1H|G|473

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain C8

50S ribosomal protein L20

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34