J3_4WSD_065

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WSD|1|1H|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_065 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1498

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4WSD|1|1H|G|1344
4WSD|1|1H|C|1345
4WSD|1|1H|G|1346
4WSD|1|1H|G|1347
4WSD|1|1H|G|1348
4WSD|1|1H|A|1349
4WSD|1|1H|C|1350
*
4WSD|1|1H|G|1381
4WSD|1|1H|G|1382
4WSD|1|1H|C|1383
4WSD|1|1H|A|1384
4WSD|1|1H|G|1385
*
4WSD|1|1H|C|1402
4WSD|1|1H|C|1403

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23