J3_4WSM_027

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WSM|1|1H|G|686, 4WSM|1|1H|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSM_027 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0937

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WSM|1|1H|C|683
4WSM|1|1H|G|684
4WSM|1|1H|A|685
4WSM|1|1H|G|686
4WSM|1|1H|C|687
4WSM|1|1H|U|688
4WSM|1|1H|A|689
*
4WSM|1|1H|U|773
4WSM|1|1H|A|774
4WSM|1|1H|G|775
*
4WSM|1|1H|C|791
4WSM|1|1H|G|792
4WSM|1|1H|A|793
4WSM|1|1H|G|794

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34