J3_4WSM_041

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WSM|1|13|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSM_041 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1674

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

4WSM|1|13|C|990
4WSM|1|13|U|991
4WSM|1|13|U|992
4WSM|1|13|G|993
4WSM|1|13|A|994
4WSM|1|13|C|995
4WSM|1|13|A|996
4WSM|1|13|U|997
*
4WSM|1|13|A|1044
4WSM|1|13|C|1045
4WSM|1|13|A|1046
4WSM|1|13|G|1047
*
4WSM|1|13|C|1210
4WSM|1|13|U|1211
4WSM|1|13|U|1212
4WSM|1|13|A|1213
4WSM|1|13|C|1214
4WSM|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z