J3_4WSM_047

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4WSM|1|14|U|271|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSM_047 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1194

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WSM|1|14|U|269
4WSM|1|14|A|270
4WSM|1|14|A|270|||A
4WSM|1|14|A|270|||B
4WSM|1|14|C|270|||C
*
4WSM|1|14|G|270|||W
4WSM|1|14|G|270|||X
4WSM|1|14|G|270|||Y
4WSM|1|14|U|270|||Z
4WSM|1|14|C|271|||A
4WSM|1|14|G|271|||B
4WSM|1|14|U|271|||C
4WSM|1|14|G|271
*
4WSM|1|14|C|366
4WSM|1|14|G|370

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9