J3_4WSM_061

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSM_061 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0651

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4WSM|1|1H|G|30
4WSM|1|1H|C|31
*
4WSM|1|1H|G|474
4WSM|1|1H|U|475
4WSM|1|1H|G|476
4WSM|1|1H|A|477
4WSM|1|1H|A|478
4WSM|1|1H|A|479
4WSM|1|1H|A|480
4WSM|1|1H|G|481
*
4WSM|1|1H|C|509
4WSM|1|1H|C|510

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain G8

50S ribosomal protein L24