J3_4WSM_062
3D structure
- PDB id
- 4WSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4WSM|1|1H|U|504, 4WSM|1|1H|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WSM_062 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0873
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WSM|1|1H|G|30
4WSM|1|1H|C|31
*
4WSM|1|1H|G|474
4WSM|1|1H|U|475
4WSM|1|1H|G|476
4WSM|1|1H|A|477
4WSM|1|1H|A|478
4WSM|1|1H|A|479
4WSM|1|1H|A|480
4WSM|1|1H|G|481
4WSM|1|1H|A|482
4WSM|1|1H|A|483
4WSM|1|1H|C|484
*
4WSM|1|1H|G|496
4WSM|1|1H|A|497
4WSM|1|1H|G|498
4WSM|1|1H|U|499
4WSM|1|1H|G|500
4WSM|1|1H|A|501
4WSM|1|1H|A|502
4WSM|1|1H|A|503
4WSM|1|1H|U|504
4WSM|1|1H|A|505
4WSM|1|1H|G|506
4WSM|1|1H|A|507
4WSM|1|1H|G|508
4WSM|1|1H|C|509
4WSM|1|1H|C|510
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain C8
- 50S ribosomal protein L20
- Chain E8
- 50S ribosomal protein L22
- Chain G8
- 50S ribosomal protein L24
Coloring options: