J3_4WT1_008

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

4WT1|1|13|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_008 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.2061

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WT1|1|13|C|1116
4WT1|1|13|G|1117
4WT1|1|13|C|1118
*
4WT1|1|13|G|1155
4WT1|1|13|G|1156
4WT1|1|13|A|1157
4WT1|1|13|C|1158
4WT1|1|13|U|1159
4WT1|1|13|G|1160
4WT1|1|13|C|1161
*
4WT1|1|13|G|1175
4WT1|1|13|A|1176
4WT1|1|13|G|1177
4WT1|1|13|G|1178
4WT1|1|13|A|1179
4WT1|1|13|A|1180
4WT1|1|13|G|1181
4WT1|1|13|G|1182
4WT1|1|13|A|1183
4WT1|1|13|G|1184

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 5I

30S ribosomal protein S14 type Z

Chain 8E

30S ribosomal protein S9