J3_4WT1_032

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_032 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0687

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4WT1|1|1H|U|2091
4WT1|1|1H|U|2092
4WT1|1|1H|G|2093
*
4WT1|1|1H|C|2196
4WT1|1|1H|U|2197
4WT1|1|1H|A|2198
4WT1|1|1H|A|2199
4WT1|1|1H|C|2205
*
4WT1|1|1H|G|2219
4WT1|1|1H|G|2224
4WT1|1|1H|A|2225
4WT1|1|1H|C|2226
4WT1|1|1H|A|2227
4WT1|1|1H|G|2228

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28