J3_4WT1_034

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WT1|1|1H|A|2518, 4WT1|1|1H|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_034 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0688

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4WT1|1|1H|C|2517
4WT1|1|1H|A|2518
4WT1|1|1H|U|2519
4WT1|1|1H|C|2520
*
4WT1|1|1H|G|2545
4WT1|1|1H|U|2546
4WT1|1|1H|U|2547
*
4WT1|1|1H|A|2561
4WT1|1|1H|U|2562
4WT1|1|1H|U|2563
4WT1|1|1H|A|2564
4WT1|1|1H|A|2565
4WT1|1|1H|A|2566
4WT1|1|1H|G|2567

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 58

50S ribosomal protein L13

Chain 68

50S ribosomal protein L14