J3_4WT1_046

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4WT1|1|14|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_046 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0914

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WT1|1|14|C|297
4WT1|1|14|G|298
4WT1|1|14|A|299
4WT1|1|14|A|300
4WT1|1|14|G|301
*
4WT1|1|14|C|316
4WT1|1|14|G|317
4WT1|1|14|C|318
4WT1|1|14|C|319
4WT1|1|14|A|320
4WT1|1|14|G|321
4WT1|1|14|A|322
4WT1|1|14|G|323
4WT1|1|14|A|324
4WT1|1|14|G|325
*
4WT1|1|14|C|337
4WT1|1|14|G|338
4WT1|1|14|U|339
4WT1|1|14|A|340
4WT1|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24