J3_4WT1_048

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_048 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0737

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WT1|1|14|G|1424
4WT1|1|14|G|1425
4WT1|1|14|G|1426
4WT1|1|14|A|1427
4WT1|1|14|C|1428
4WT1|1|14|G|1429
*
4WT1|1|14|C|1564
4WT1|1|14|C|1565
*
4WT1|1|14|G|1568
4WT1|1|14|A|1569
4WT1|1|14|A|1570
4WT1|1|14|A|1571
4WT1|1|14|A|1572
4WT1|1|14|G|1573
4WT1|1|14|C|1574

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2