J3_4WT8_010
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4WT8|1|Bb|A|953, 4WT8|1|Bb|G|954, 4WT8|1|Bb|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WT8_010 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0726
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4WT8|1|Bb|U|933
4WT8|1|Bb|U|934
4WT8|1|Bb|U|935
4WT8|1|Bb|A|936
4WT8|1|Bb|A|937
4WT8|1|Bb|U|938
4WT8|1|Bb|U|939
4WT8|1|Bb|C|940
*
4WT8|1|Bb|G|951
4WT8|1|Bb|A|952
4WT8|1|Bb|A|953
4WT8|1|Bb|G|954
4WT8|1|Bb|A|955
4WT8|1|Bb|A|956
4WT8|1|Bb|C|957
4WT8|1|Bb|C|958
4WT8|1|Bb|U|959
4WT8|1|Bb|U|960
4WT8|1|Bb|A|961
4WT8|1|Bb|C|962
*
4WT8|1|Bb|G|1203
4WT8|1|Bb|G|1204
4WT8|1|Bb|C|1205
4WT8|1|Bb|G|1206
4WT8|1|Bb|A|1207
Current chains
- Chain Bb
- RNA (1504-MER)
Nearby chains
- Chain BJ
- 30S ribosomal protein S10
- Chain BM
- 30S ribosomal protein S13
- Chain BN
- 30S ribosomal protein S14 type Z
- Chain BT
- 30S ribosomal protein S19
- Chain D2
- tRNA (5'-D(*AP*UP*CP*CP*CP*CP*GP*UP*GP*UP*CP*CP*UP*UP*GP*GP*UP*UP*CP*G)-3')
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