J3_4WT8_023

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_023 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0724

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WT8|1|D1|C|744
4WT8|1|D1|A|745
4WT8|1|D1|G|746
*
4WT8|1|D1|C|778
4WT8|1|D1|G|779
4WT8|1|D1|A|780
4WT8|1|D1|A|781
4WT8|1|D1|C|782
*
4WT8|1|D1|G|806
4WT8|1|D1|A|807
4WT8|1|D1|U|808
4WT8|1|D1|G|809

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DB

50S ribosomal protein L2