J3_4WT8_025

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4WT8|1|D1|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_025 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0698

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4WT8|1|D1|C|1351
4WT8|1|D1|A|1352
4WT8|1|D1|A|1353
4WT8|1|D1|G|1354
*
4WT8|1|D1|C|1650
4WT8|1|D1|G|1651
4WT8|1|D1|C|1652
4WT8|1|D1|A|1653
4WT8|1|D1|A|1654
4WT8|1|D1|A|1655
4WT8|1|D1|C|1656
*
4WT8|1|D1|G|1665
4WT8|1|D1|U|1666
4WT8|1|D1|G|1667

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D8

50S ribosomal protein L34