J3_4WT8_040

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_040 not in the Motif Atlas

Geometric match to J3_6CZR_016

Geometric discrepancy: 0.1629

The information below is about J3_6CZR_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.4

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

4WT8|1|Bb|C|570
4WT8|1|Bb|G|571
4WT8|1|Bb|G|572
*
4WT8|1|Bb|C|635
4WT8|1|Bb|U|636
4WT8|1|Bb|A|637
4WT8|1|Bb|G|638
*
4WT8|1|Bb|C|738
4WT8|1|Bb|G|739

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BL

30S ribosomal protein S12

Chain BO

30S ribosomal protein S15

Chain BR

30S ribosomal protein S17