J3_4WT8_043

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_043 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0868

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|Bb|C|914
4WT8|1|Bb|A|915
4WT8|1|Bb|A|916
4WT8|1|Bb|G|917
*
4WT8|1|Bb|C|1326
4WT8|1|Bb|U|1327
4WT8|1|Bb|A|1328
4WT8|1|Bb|G|1329
4WT8|1|Bb|U|1330
4WT8|1|Bb|A|1331
4WT8|1|Bb|A|1332
*
4WT8|1|Bb|U|1355
4WT8|1|Bb|G|1356
4WT8|1|Bb|A|1357
4WT8|1|Bb|A|1358
4WT8|1|Bb|U|1359
4WT8|1|Bb|A|1360
4WT8|1|Bb|C|1361
4WT8|1|Bb|G|1362

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9

Chain D3

Transfer RNA; tRNA