J3_4WT8_054
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4WT8|1|C1|A|2399, 4WT8|1|C1|U|2401, 4WT8|1|C1|A|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WT8_054 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1335
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4WT8|1|C1|G|2293
4WT8|1|C1|C|2294
4WT8|1|C1|C|2295
*
4WT8|1|C1|G|2395
4WT8|1|C1|C|2396
4WT8|1|C1|C|2397
4WT8|1|C1|U|2398
4WT8|1|C1|A|2399
4WT8|1|C1|G|2400
4WT8|1|C1|U|2401
4WT8|1|C1|G|2402
4WT8|1|C1|A|2403
4WT8|1|C1|A|2404
4WT8|1|C1|C|2405
4WT8|1|C1|C|2406
*
4WT8|1|C1|G|2432
4WT8|1|C1|A|2433
4WT8|1|C1|U|2434
4WT8|1|C1|C|2435
4WT8|1|C1|A|2436
4WT8|1|C1|A|2437
4WT8|1|C1|C|2438
Current chains
- Chain C1
- 23S rRNA (2899-MER)
Nearby chains
- Chain C3
- Transfer RNA; tRNA
- Chain C7
- 50S ribosomal protein L33
- Chain C9
- 50S ribosomal protein L35
- Chain CH
- 50S ribosomal protein L28
- Chain CO
- 50S ribosomal protein L15
- Chain Ca
- 50S ribosomal protein L27
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