J3_4WT8_068

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUAGCUCAGUCGGUAGAGCAGG*CCGUGUCC*GU

Length

32 nucleotides

Bulged bases

4WT8|1|C2|U|16, 4WT8|1|C2|C|17, 4WT8|1|C2|G|18, 4WT8|1|C2|G|19, 4WT8|1|C2|U|20, 4WT8|1|C2|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT8|1|C2|A|7
4WT8|1|C2|U|8
4WT8|1|C2|A|9
4WT8|1|C2|G|10
4WT8|1|C2|C|11
4WT8|1|C2|U|12
4WT8|1|C2|C|13
4WT8|1|C2|A|14
4WT8|1|C2|G|15
4WT8|1|C2|U|16
4WT8|1|C2|C|17
4WT8|1|C2|G|18
4WT8|1|C2|G|19
4WT8|1|C2|U|20
4WT8|1|C2|A|21
4WT8|1|C2|G|22
4WT8|1|C2|A|23
4WT8|1|C2|G|24
4WT8|1|C2|C|25
4WT8|1|C2|A|26
4WT8|1|C2|G|27
4WT8|1|C2|G|28
*
4WT8|1|C2|C|42
4WT8|1|C2|C|43
4WT8|1|C2|G|44
4WT8|1|C2|U|45
4WT8|1|C2|G|46
4WT8|1|C2|U|47
4WT8|1|C2|C|48
4WT8|1|C2|C|49
*
4WT8|1|C2|G|65
4WT8|1|C2|U|66

Current chains

Chain C2

A site tNA, E site tNA

Nearby chains

Chain Ab

Small subunit ribosomal RNA; SSU rRNA

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

Transfer RNA; tRNA