J3_4WU1_017

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WU1_017 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.2689

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

4WU1|1|14|C|2789
4WU1|1|14|A|2790
4WU1|1|14|C|2791
*
4WU1|1|14|G|2805
4WU1|1|14|G|2807
4WU1|1|14|U|2808
4WU1|1|14|A|2809
4WU1|1|14|A|2810
4WU1|1|14|G|2811
*
4WU1|1|14|C|2889
4WU1|1|14|G|2891
4WU1|1|14|A|2892
4WU1|1|14|G|2893
4WU1|1|14|G|2894

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3