J3_4WU1_069

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WU1|1|1H|C|34, 4WU1|1|1H|U|448, 4WU1|1|1H|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WU1_069 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2687

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4WU1|1|1H|C|32
4WU1|1|1H|U|33
4WU1|1|1H|C|34
4WU1|1|1H|G|35
*
4WU1|1|1H|C|445
4WU1|1|1H|G|446
4WU1|1|1H|A|447
4WU1|1|1H|U|448
4WU1|1|1H|A|449
4WU1|1|1H|G|450
4WU1|1|1H|C|451
4WU1|1|1H|G|452
4WU1|1|1H|C|453
4WU1|1|1H|A|454
4WU1|1|1H|C|455
4WU1|1|1H|C|456
4WU1|1|1H|A|457
4WU1|1|1H|G|458
4WU1|1|1H|U|459
4WU1|1|1H|A|460
4WU1|1|1H|C|461
*
4WU1|1|1H|G|468
4WU1|1|1H|G|469
4WU1|1|1H|A|470
4WU1|1|1H|A|471
4WU1|1|1H|A|472
4WU1|1|1H|G|473

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain C8

50S ribosomal protein L20

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34