3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4WU1|1|1H|C|34, 4WU1|1|1H|U|448, 4WU1|1|1H|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WU1_069 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.2687
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4WU1|1|1H|C|32
4WU1|1|1H|U|33
4WU1|1|1H|C|34
4WU1|1|1H|G|35
*
4WU1|1|1H|C|445
4WU1|1|1H|G|446
4WU1|1|1H|A|447
4WU1|1|1H|U|448
4WU1|1|1H|A|449
4WU1|1|1H|G|450
4WU1|1|1H|C|451
4WU1|1|1H|G|452
4WU1|1|1H|C|453
4WU1|1|1H|A|454
4WU1|1|1H|C|455
4WU1|1|1H|C|456
4WU1|1|1H|A|457
4WU1|1|1H|G|458
4WU1|1|1H|U|459
4WU1|1|1H|A|460
4WU1|1|1H|C|461
*
4WU1|1|1H|G|468
4WU1|1|1H|G|469
4WU1|1|1H|A|470
4WU1|1|1H|A|471
4WU1|1|1H|A|472
4WU1|1|1H|G|473

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 31
50S ribosomal protein L4
Chain C8
50S ribosomal protein L20
Chain F8
50S ribosomal protein L23
Chain P8
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3518 s